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On the Mac it should be pretty easy. First open Terminal and make sure that CLI is included in your installation of PHP. At the prompt type 'php -v' without quotes.If it has CLI anywhere in the first line of the response then you are good to go.

Next add '#!/usr/local/bin/php -q' to the first line of the Report.php file and all the other php files. Then have FileMaker Server call the Report.php file instead of the runReport.bat file. You will need to assign it a local user. I couldn't get the default fmserver account to work.